HL_9GHG_053

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

9GHG|1|A|A|2295, 9GHG|1|A|C|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_053 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.0685

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9GHG|1|A|C|2291
9GHG|1|A|U|2292
9GHG|1|A|A|2293
9GHG|1|A|A|2294
9GHG|1|A|A|2295
9GHG|1|A|A|2296
9GHG|1|A|G|2297
9GHG|1|A|G|2298
9GHG|1|A|U|2299
9GHG|1|A|A|2300
9GHG|1|A|A|2301
9GHG|1|A|C|2302
9GHG|1|A|G|2303

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27