HL_9GHG_066

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9GHG|1|A|U|2821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_066 not in the Motif Atlas

Geometric match to HL_4PMI_004

Geometric discrepancy: 0.0948

The information below is about HL_4PMI_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9GHG|1|A|C|2819
9GHG|1|A|U|2820
9GHG|1|A|U|2821
9GHG|1|A|C|2822
9GHG|1|A|G|2823
9GHG|1|A|G|2824

Current chains

Chain A

23S rRNA

Nearby chains