HL_9GHG_067

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

AAAGAUGAU

Length

9 nucleotides

Bulged bases

9GHG|1|A|A|2840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_067 not in the Motif Atlas

Homologous match to HL_4WF9_064

Geometric discrepancy: 0.1651

The information below is about HL_4WF9_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9GHG|1|A|A|2839
9GHG|1|A|A|2840
9GHG|1|A|A|2841
9GHG|1|A|G|2842
9GHG|1|A|A|2843
9GHG|1|A|U|2844
9GHG|1|A|G|2845
9GHG|1|A|A|2846
9GHG|1|A|U|2847

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L3

Chain Q

50S ribosomal protein L17