HL_9GHG_103

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

UGACAAA

Length

7 nucleotides

Bulged bases

9GHG|1|a|C|1178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_103 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.3123

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9GHG|1|a|U|1175
9GHG|1|a|G|1176
9GHG|1|a|A|1177
9GHG|1|a|C|1178
9GHG|1|a|A|1179
9GHG|1|a|A|1180
9GHG|1|a|A|1181

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

30S ribosomal protein S2