HL_9GHG_108

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CGG(MA6)(MA6)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_108 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.1055

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9GHG|1|a|C|1526
9GHG|1|a|G|1527
9GHG|1|a|G|1528
9GHG|1|a|MA6|1529
9GHG|1|a|MA6|1530
9GHG|1|a|G|1531

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA