HL_9GJ5_002

3D structure

PDB id

9GJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with NatA in distal position and Ebp1

Experimental method

ELECTRON MICROSCOPY

Resolution

4.61 Å

Loop

Sequence

CGUGG

Length

5 nucleotides

Bulged bases

9GJ5|1|1|U|224, 9GJ5|1|1|G|225

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GJ5_002 not in the Motif Atlas

Geometric match to HL_9DFE_010

Geometric discrepancy: 0.1114

The information below is about HL_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.11

Basepair signature

cWW-F

Number of instances in this motif group

25

Unit IDs

9GJ5|1|1|C|222
9GJ5|1|1|G|223
9GJ5|1|1|U|224
9GJ5|1|1|G|225
9GJ5|1|1|G|226

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

Large ribosomal subunit protein uL24