HL_9GJ5_004

3D structure

PDB id

9GJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with NatA in distal position and Ebp1

Experimental method

ELECTRON MICROSCOPY

Resolution

4.61 Å

Loop

Sequence

UGAAGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GJ5_004 not in the Motif Atlas

Homologous match to HL_9AXU_011

Geometric discrepancy: 0.2025

The information below is about HL_9AXU_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9GJ5|1|1|U|393
9GJ5|1|1|G|394
9GJ5|1|1|A|395
9GJ5|1|1|A|396
9GJ5|1|1|G|397
9GJ5|1|1|A|398

Current chains

Chain 1

28S rRNA

Nearby chains