HL_9GR1_007

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

9GR1|1|A|C|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GR1_007 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.2004

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9GR1|1|A|A|320
9GR1|1|A|A|321
9GR1|1|A|C|322
9GR1|1|A|U|323
9GR1|1|A|G|324
9GR1|1|A|A|325
9GR1|1|A|G|326
9GR1|1|A|A|327
9GR1|1|A|C|328
9GR1|1|A|A|329
9GR1|1|A|C|330
9GR1|1|A|G|331
9GR1|1|A|G|332
9GR1|1|A|U|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

Small ribosomal subunit protein bS20