HL_9GR1_021

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UGUGAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GR1_021 not in the Motif Atlas

Homologous match to HL_4LFB_024

Geometric discrepancy: 0.0476

The information below is about HL_4LFB_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9GR1|1|A|U|1076
9GR1|1|A|G|1077
9GR1|1|A|U|1078
9GR1|1|A|G|1079
9GR1|1|A|A|1080
9GR1|1|A|A|1081

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain E

Small ribosomal subunit protein uS5