HL_9GR1_068

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

9GR1|1|a|C|1495, 9GR1|1|a|U|1499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GR1_068 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.0594

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9GR1|1|a|G|1494
9GR1|1|a|C|1495
9GR1|1|a|A|1496
9GR1|1|a|A|1497
9GR1|1|a|A|1498
9GR1|1|a|U|1499
9GR1|1|a|C|1500

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2