HL_9GR1_097

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

9GR1|1|a|A|2824

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GR1_097 not in the Motif Atlas

Homologous match to HL_9DFE_065

Geometric discrepancy: 0.1509

The information below is about HL_9DFE_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9GR1|1|a|G|2823
9GR1|1|a|A|2824
9GR1|1|a|A|2825
9GR1|1|a|G|2826
9GR1|1|a|A|2827
9GR1|1|a|C|2828
9GR1|1|a|G|2829
9GR1|1|a|A|2830
9GR1|1|a|C|2831

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

50S ribosomal protein L17