HL_9GUP_005

3D structure

PDB id

9GUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (open head)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9GUP|1|A|U|209, 9GUP|1|A|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GUP_005 not in the Motif Atlas

Homologous match to HL_5J7L_005

Geometric discrepancy: 0.5509

The information below is about HL_5J7L_005

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9GUP|1|A|C|207
9GUP|1|A|U|208
9GUP|1|A|U|209
9GUP|1|A|C|210
9GUP|1|A|G|211
9GUP|1|A|G|212

Current chains

Chain A

16S ribosomal RNA

Nearby chains