HL_9GUP_012

3D structure

PDB id

9GUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (open head)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9GUP|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GUP_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2972

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9GUP|1|A|G|462
9GUP|1|A|U|463
9GUP|1|A|U|464
9GUP|1|A|A|465
9GUP|1|A|A|466
9GUP|1|A|U|467
9GUP|1|A|A|468
9GUP|1|A|C|469
9GUP|1|A|C|470

Current chains

Chain A

16S ribosomal RNA

Nearby chains