HL_9GUP_023

3D structure

PDB id

9GUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (open head)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9GUP|1|A|U|1030, 9GUP|1|A|C|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GUP_023 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2155

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9GUP|1|A|C|1028
9GUP|1|A|U|1029
9GUP|1|A|U|1030
9GUP|1|A|C|1031
9GUP|1|A|G|1032
9GUP|1|A|G|1033

Current chains

Chain A

16S ribosomal RNA

Nearby chains