HL_9GUQ_027

3D structure

PDB id

9GUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S PIC (Pre-Initiation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

9GUQ|1|A|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GUQ_027 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.2982

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

9GUQ|1|A|U|1165
9GUQ|1|A|G|1166
9GUQ|1|A|A|1167
9GUQ|1|A|U|1168
9GUQ|1|A|A|1169
9GUQ|1|A|A|1170
9GUQ|1|A|A|1171

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

30S ribosomal protein S1

Chain C

30S ribosomal protein S2

Chain V

30S ribosomal protein S21