3D structure

PDB id
9GUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S PIC (Pre-Initiation complex)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CAGCCUGG(H2U)AG
Length
11 nucleotides
Bulged bases
9GUQ|1|W|C|17, 9GUQ|1|W|U|18, 9GUQ|1|W|G|19, 9GUQ|1|W|G|20, 9GUQ|1|W|H2U|21
QA status
Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9GUQ_033 not in the Motif Atlas
Homologous match to HL_1QF6_001
Geometric discrepancy: 0.1672
The information below is about HL_1QF6_001
Detailed Annotation
tRNA D-loop
Broad Annotation
No text annotation
Motif group
HL_20490.1
Basepair signature
cWW-cWS-F
Number of instances in this motif group
13

Unit IDs

9GUQ|1|W|C|13
9GUQ|1|W|A|14
9GUQ|1|W|G|15
9GUQ|1|W|C|16
9GUQ|1|W|C|17
9GUQ|1|W|U|18
9GUQ|1|W|G|19
9GUQ|1|W|G|20
9GUQ|1|W|H2U|21
9GUQ|1|W|A|22
9GUQ|1|W|G|23

Current chains

Chain W
tRNA(fmet) P-site

Nearby chains

No other chains within 10Å

Coloring options:


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