HL_9GUQ_033
3D structure
- PDB id
- 9GUQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S PIC (Pre-Initiation complex)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAGCCUGG(H2U)AG
- Length
- 11 nucleotides
- Bulged bases
- 9GUQ|1|W|C|17, 9GUQ|1|W|U|18, 9GUQ|1|W|G|19, 9GUQ|1|W|G|20, 9GUQ|1|W|H2U|21
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GUQ_033 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.1672
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
9GUQ|1|W|C|13
9GUQ|1|W|A|14
9GUQ|1|W|G|15
9GUQ|1|W|C|16
9GUQ|1|W|C|17
9GUQ|1|W|U|18
9GUQ|1|W|G|19
9GUQ|1|W|G|20
9GUQ|1|W|H2U|21
9GUQ|1|W|A|22
9GUQ|1|W|G|23
Current chains
- Chain W
- tRNA(fmet) P-site
Nearby chains
No other chains within 10ÅColoring options: