HL_9GUT_033
3D structure
- PDB id
- 9GUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S mRNA delivery complex (bS1 resolved)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAGCCUGG(H2U)AG
- Length
- 11 nucleotides
- Bulged bases
- 9GUT|1|W|U|18, 9GUT|1|W|G|19, 9GUT|1|W|G|20, 9GUT|1|W|H2U|21
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GUT_033 not in the Motif Atlas
- Homologous match to HL_7MRL_001
- Geometric discrepancy: 0.1705
- The information below is about HL_7MRL_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
9GUT|1|W|C|13
9GUT|1|W|A|14
9GUT|1|W|G|15
9GUT|1|W|C|16
9GUT|1|W|C|17
9GUT|1|W|U|18
9GUT|1|W|G|19
9GUT|1|W|G|20
9GUT|1|W|H2U|21
9GUT|1|W|A|22
9GUT|1|W|G|23
Current chains
- Chain W
- tRNA(fmet) P-site
Nearby chains
- Chain E
- Small ribosomal subunit protein uS4
- Chain F
- 30S ribosomal protein S5
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