HL_9GUT_035

3D structure

PDB id

9GUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (bS1 resolved)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(5MU)(PSU)CAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GUT_035 not in the Motif Atlas

Homologous match to HL_6UGG_006

Geometric discrepancy: 0.134

The information below is about HL_6UGG_006

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

9GUT|1|W|G|54
9GUT|1|W|5MU|55
9GUT|1|W|PSU|56
9GUT|1|W|C|57
9GUT|1|W|A|58
9GUT|1|W|A|59
9GUT|1|W|A|60
9GUT|1|W|U|61
9GUT|1|W|C|62

Current chains

Chain W

tRNA(fmet) P-site

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain E

Small ribosomal subunit protein uS4

Chain F

30S ribosomal protein S5