HL_9GXX_011

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9GXX|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GXX_011 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2841

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9GXX|1|A|G|462
9GXX|1|A|U|463
9GXX|1|A|U|464
9GXX|1|A|A|465
9GXX|1|A|A|466
9GXX|1|A|U|467
9GXX|1|A|A|468
9GXX|1|A|C|469
9GXX|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains