HL_9GXX_035

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

C(RSP)UGCU(T6A)AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: RSP, T6A

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GXX_035 not in the Motif Atlas

Homologous match to HL_6UFH_007

Geometric discrepancy: 0.1786

The information below is about HL_6UFH_007

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

9GXX|1|Y|C|31
9GXX|1|Y|RSP|32
9GXX|1|Y|U|33
9GXX|1|Y|G|34
9GXX|1|Y|C|35
9GXX|1|Y|U|36
9GXX|1|Y|T6A|37
9GXX|1|Y|A|38
9GXX|1|Y|G|39

Current chains

Chain Y

tRNA(Ser3)

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain X

mRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA