HL_9GXX_063

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

9GXX|1|a|A|781, 9GXX|1|a|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GXX_063 not in the Motif Atlas

Homologous match to HL_5J7L_156

Geometric discrepancy: 0.0486

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

9GXX|1|a|U|779
9GXX|1|a|G|780
9GXX|1|a|A|781
9GXX|1|a|A|782
9GXX|1|a|A|783
9GXX|1|a|G|784
9GXX|1|a|G|785

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2