HL_9GXX_072

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9GXX|1|a|U|1396, 9GXX|1|a|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GXX_072 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.0747

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9GXX|1|a|G|1389
9GXX|1|a|U|1390
9GXX|1|a|U|1391
9GXX|1|a|A|1392
9GXX|1|a|A|1393
9GXX|1|a|U|1394
9GXX|1|a|A|1395
9GXX|1|a|U|1396
9GXX|1|a|U|1397
9GXX|1|a|C|1398

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23