HL_9GXX_087

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

9GXX|1|a|6MZ|2030, 9GXX|1|a|A|2031, 9GXX|1|a|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GXX_087 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.0783

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9GXX|1|a|G|2027
9GXX|1|a|U|2028
9GXX|1|a|G|2029
9GXX|1|a|6MZ|2030
9GXX|1|a|A|2031
9GXX|1|a|G|2032
9GXX|1|a|A|2033
9GXX|1|a|U|2034
9GXX|1|a|G|2035
9GXX|1|a|C|2036

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain q

Large ribosomal subunit protein bL21

Chain z

Large ribosomal subunit protein bL32