HL_9GY4_012

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

9GY4|1|5|U|1179, 9GY4|1|5|C|1180, 9GY4|1|5|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GY4_012 not in the Motif Atlas

Geometric match to HL_4OOG_001

Geometric discrepancy: 0.1328

The information below is about HL_4OOG_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

9GY4|1|5|G|1178
9GY4|1|5|U|1179
9GY4|1|5|C|1180
9GY4|1|5|C|1181
9GY4|1|5|C|1182
9GY4|1|5|C|1183

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

Ribosomal protein uL16-like