HL_9GY4_040

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

9GY4|1|5|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GY4_040 not in the Motif Atlas

Homologous match to HL_8P9A_153

Geometric discrepancy: 0.218

The information below is about HL_8P9A_153

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9GY4|1|5|U|2810
9GY4|1|5|G|2811
9GY4|1|5|A|2812
9GY4|1|5|A|2813
9GY4|1|5|C|2814
9GY4|1|5|A|2815
9GY4|1|5|G|2816

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19