HL_9GY4_045

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GY4_045 not in the Motif Atlas

Homologous match to HL_8P9A_159

Geometric discrepancy: 0.1414

The information below is about HL_8P9A_159

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9GY4|1|5|A|3724
9GY4|1|5|G|3725
9GY4|1|5|A|3726
9GY4|1|5|A|3727
9GY4|1|5|A|3728
9GY4|1|5|U|3729

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a

Chain Lz

60S ribosomal protein L10a