HL_9GY4_047
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 9GY4|1|5|A|3876, 9GY4|1|5|A|3877, 9GY4|1|5|C|3878
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GY4_047 not in the Motif Atlas
- Homologous match to HL_8P9A_162
- Geometric discrepancy: 0.0865
- The information below is about HL_8P9A_162
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9GY4|1|5|G|3873
9GY4|1|5|G|3874
9GY4|1|5|G|3875
9GY4|1|5|A|3876
9GY4|1|5|A|3877
9GY4|1|5|C|3878
9GY4|1|5|G|3879
9GY4|1|5|G|3880
9GY4|1|5|G|3881
9GY4|1|5|C|3882
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain Le
- 60S ribosomal protein L32
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