HL_9GY4_061
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9GY4|1|5|G|4694, 9GY4|1|5|C|4698
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GY4_061 not in the Motif Atlas
- Homologous match to HL_8CRE_066
- Geometric discrepancy: 0.0786
- The information below is about HL_8CRE_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_74055.2
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
9GY4|1|5|C|4688
9GY4|1|5|U|4689
9GY4|1|5|G|4690
9GY4|1|5|A|4691
9GY4|1|5|A|4692
9GY4|1|5|C|4693
9GY4|1|5|G|4694
9GY4|1|5|C|4695
9GY4|1|5|C|4696
9GY4|1|5|U|4697
9GY4|1|5|C|4698
9GY4|1|5|U|4699
9GY4|1|5|A|4700
9GY4|1|5|A|4701
9GY4|1|5|G|4702
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LH
- 60S ribosomal protein L9
- Chain LO
- 60S ribosomal protein L13a
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
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