HL_9GY4_062

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAAGGC

Length

8 nucleotides

Bulged bases

9GY4|1|5|A|4910, 9GY4|1|5|A|4911, 9GY4|1|5|G|4913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GY4_062 not in the Motif Atlas

Geometric match to HL_8CRE_068

Geometric discrepancy: 0.1361

The information below is about HL_8CRE_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07886.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

9GY4|1|5|G|4907
9GY4|1|5|G|4908
9GY4|1|5|A|4909
9GY4|1|5|A|4910
9GY4|1|5|A|4911
9GY4|1|5|G|4912
9GY4|1|5|G|4913
9GY4|1|5|C|4914

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a