HL_9GY4_069
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UAGUCGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 9GY4|1|G|U|16, 9GY4|1|G|C|17, 9GY4|1|G|A|21
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GY4_069 not in the Motif Atlas
- Homologous match to HL_3KFU_004
- Geometric discrepancy: 0.2332
- The information below is about HL_3KFU_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9GY4|1|G|U|13
9GY4|1|G|A|14
9GY4|1|G|G|15
9GY4|1|G|U|16
9GY4|1|G|C|17
9GY4|1|G|G|18
9GY4|1|G|G|19
9GY4|1|G|U|20
9GY4|1|G|A|21
9GY4|1|G|G|22
Current chains
- Chain G
- tRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- 60S ribosomal protein L11
- Chain Lo
- 60S ribosomal protein L36a
- Chain Z
- Ribosome quality control complex subunit NEMF
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