HL_9GY4_071

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUUCGAUUCC

Length

11 nucleotides

Bulged bases

9GY4|1|G|C|56, 9GY4|1|G|U|59

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GY4|1|G|G|52
9GY4|1|G|G|53
9GY4|1|G|U|54
9GY4|1|G|U|55
9GY4|1|G|C|56
9GY4|1|G|G|57
9GY4|1|G|A|58
9GY4|1|G|U|59
9GY4|1|G|U|60
9GY4|1|G|C|61
9GY4|1|G|C|62

Current chains

Chain G

tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain LI

Ribosomal protein uL16-like

Chain LJ

60S ribosomal protein L11