HL_9H0L_059

3D structure

PDB id

9H0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with cognate tRNASer3 bound to A-site AGC codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

9H0L|1|a|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H0L_059 not in the Motif Atlas

Geometric match to HL_7KKV_003

Geometric discrepancy: 0.2282

The information below is about HL_7KKV_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9H0L|1|a|C|611
9H0L|1|a|G|612
9H0L|1|a|A|613
9H0L|1|a|A|614
9H0L|1|a|U|615
9H0L|1|a|A|616
9H0L|1|a|G|617

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4