HL_9H0L_075

3D structure

PDB id

9H0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with cognate tRNASer3 bound to A-site AGC codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

9H0L|1|a|C|1493, 9H0L|1|a|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H0L_075 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1156

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9H0L|1|a|G|1492
9H0L|1|a|C|1493
9H0L|1|a|A|1494
9H0L|1|a|A|1495
9H0L|1|a|A|1496
9H0L|1|a|U|1497
9H0L|1|a|C|1498

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2