HL_9H3M_016

3D structure

PDB id

9H3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

4.41 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

9H3M|1|A|U|546, 9H3M|1|A|G|549

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3M_016 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1952

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

9H3M|1|A|G|543
9H3M|1|A|C|544
9H3M|1|A|U|545
9H3M|1|A|U|546
9H3M|1|A|A|547
9H3M|1|A|G|548
9H3M|1|A|G|549
9H3M|1|A|C|550

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13

Chain R

Large ribosomal subunit protein bL21