HL_9H3M_029

3D structure

PDB id

9H3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

4.41 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3M_029 not in the Motif Atlas

Homologous match to HL_4WF9_032

Geometric discrepancy: 0.4149

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9H3M|1|A|G|1281
9H3M|1|A|U|1282
9H3M|1|A|G|1283
9H3M|1|A|A|1284
9H3M|1|A|A|1285
9H3M|1|A|A|1286
9H3M|1|A|A|1287
9H3M|1|A|G|1288
9H3M|1|A|C|1289

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein bL17