HL_9H3N_040

3D structure

PDB id

9H3N (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

3.69 Å

Loop

Sequence

CUGAAGUAGG

Length

10 nucleotides

Bulged bases

9H3N|1|A|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3N_040 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.118

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

9H3N|1|A|C|2527
9H3N|1|A|U|2528
9H3N|1|A|G|2529
9H3N|1|A|A|2530
9H3N|1|A|A|2531
9H3N|1|A|G|2532
9H3N|1|A|U|2533
9H3N|1|A|A|2534
9H3N|1|A|G|2535
9H3N|1|A|G|2536

Current chains

Chain A

23S ribosomal RNA

Nearby chains