HL_9H3R_036

3D structure

PDB id

9H3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

4.12 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9H3R|1|A|A|1614, 9H3R|1|A|A|1616, 9H3R|1|A|A|1618

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3R_036 not in the Motif Atlas

Homologous match to HL_9DFE_038

Geometric discrepancy: 0.3307

The information below is about HL_9DFE_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

9H3R|1|A|C|1612
9H3R|1|A|G|1613
9H3R|1|A|A|1614
9H3R|1|A|C|1615
9H3R|1|A|A|1616
9H3R|1|A|C|1617
9H3R|1|A|A|1618
9H3R|1|A|G|1619

Current chains

Chain A

23S ribosomal RNA

Nearby chains