HL_9H3S_045

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

9H3S|1|A|A|2211, 9H3S|1|A|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3S_045 not in the Motif Atlas

Homologous match to HL_4WF9_048

Geometric discrepancy: 0.4618

The information below is about HL_4WF9_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81964.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9H3S|1|A|G|2209
9H3S|1|A|U|2210
9H3S|1|A|A|2211
9H3S|1|A|A|2212
9H3S|1|A|U|2213
9H3S|1|A|C|2214
9H3S|1|A|C|2215

Current chains

Chain A

23S ribosomal RNA

Nearby chains