HL_9H3S_053

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

9H3S|1|A|U|2473

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3S_053 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.2338

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9H3S|1|A|A|2471
9H3S|1|A|G|2472
9H3S|1|A|U|2473
9H3S|1|A|U|2474
9H3S|1|A|C|2475
9H3S|1|A|A|2476
9H3S|1|A|U|2477
9H3S|1|A|A|2478
9H3S|1|A|U|2479

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36A

Chain G

Large ribosomal subunit protein uL6