HL_9H3T_036

3D structure

PDB id

9H3T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_L2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.85 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9H3T|1|A|A|1614, 9H3T|1|A|A|1616, 9H3T|1|A|A|1618

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3T_036 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1543

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

9H3T|1|A|C|1612
9H3T|1|A|G|1613
9H3T|1|A|A|1614
9H3T|1|A|C|1615
9H3T|1|A|A|1616
9H3T|1|A|C|1617
9H3T|1|A|A|1618
9H3T|1|A|G|1619

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain S

Large ribosomal subunit protein uL22