HL_9H3V_020

3D structure

PDB id

9H3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_L2-L28

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3V_020 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.2196

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9H3V|1|A|G|712
9H3V|1|A|G|713
9H3V|1|A|U|714
9H3V|1|A|A|715
9H3V|1|A|A|716
9H3V|1|A|C|717
9H3V|1|A|A|718
9H3V|1|A|C|719

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2