HL_9H3V_021

3D structure

PDB id

9H3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_L2-L28

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

UGUUGAAAAA

Length

10 nucleotides

Bulged bases

9H3V|1|A|U|747, 9H3V|1|A|A|751, 9H3V|1|A|A|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3V_021 not in the Motif Atlas

Homologous match to HL_7A0S_022

Geometric discrepancy: 0.2558

The information below is about HL_7A0S_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

9H3V|1|A|U|744
9H3V|1|A|G|745
9H3V|1|A|U|746
9H3V|1|A|U|747
9H3V|1|A|G|748
9H3V|1|A|A|749
9H3V|1|A|A|750
9H3V|1|A|A|751
9H3V|1|A|A|752
9H3V|1|A|A|753

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain S

Large ribosomal subunit protein uL22