HL_9H3V_036

3D structure

PDB id

9H3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_L2-L28

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9H3V|1|A|A|1614, 9H3V|1|A|A|1616, 9H3V|1|A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3V_036 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.1499

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9H3V|1|A|C|1612
9H3V|1|A|G|1613
9H3V|1|A|A|1614
9H3V|1|A|C|1615
9H3V|1|A|A|1616
9H3V|1|A|C|1617
9H3V|1|A|A|1618
9H3V|1|A|G|1619

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain S

Large ribosomal subunit protein uL22