HL_9H3V_054

3D structure

PDB id

9H3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_L2-L28

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9H3V|1|A|G|2751, 9H3V|1|A|C|2755

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3V_054 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.4273

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.1

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

9H3V|1|A|C|2745
9H3V|1|A|U|2746
9H3V|1|A|G|2747
9H3V|1|A|A|2748
9H3V|1|A|A|2749
9H3V|1|A|A|2750
9H3V|1|A|G|2751
9H3V|1|A|C|2752
9H3V|1|A|A|2753
9H3V|1|A|U|2754
9H3V|1|A|C|2755
9H3V|1|A|U|2756
9H3V|1|A|A|2757
9H3V|1|A|A|2758
9H3V|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains