HL_9H3X_021

3D structure

PDB id

9H3X (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68_L35

Experimental method

ELECTRON MICROSCOPY

Resolution

4.12 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3X_021 not in the Motif Atlas

Homologous match to HL_9DFE_020

Geometric discrepancy: 0.2626

The information below is about HL_9DFE_020

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9H3X|1|A|G|712
9H3X|1|A|G|713
9H3X|1|A|U|714
9H3X|1|A|A|715
9H3X|1|A|A|716
9H3X|1|A|C|717
9H3X|1|A|A|718
9H3X|1|A|C|719

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2