HL_9H3Z_024

3D structure

PDB id

9H3Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

9H3Z|1|A|U|958, 9H3Z|1|A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3Z_024 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.2822

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9H3Z|1|A|U|955
9H3Z|1|A|G|956
9H3Z|1|A|C|957
9H3Z|1|A|U|958
9H3Z|1|A|A|959
9H3Z|1|A|A|960
9H3Z|1|A|C|961
9H3Z|1|A|G|962

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16