HL_9H3Z_052

3D structure

PDB id

9H3Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3Z_052 not in the Motif Atlas

Homologous match to HL_9DFE_053

Geometric discrepancy: 0.1756

The information below is about HL_9DFE_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H3Z|1|A|G|2303
9H3Z|1|A|G|2304
9H3Z|1|A|U|2305
9H3Z|1|A|C|2306
9H3Z|1|A|G|2307
9H3Z|1|A|G|2308
9H3Z|1|A|A|2309
9H3Z|1|A|C|2310
9H3Z|1|A|A|2311
9H3Z|1|A|U|2312
9H3Z|1|A|C|2313

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL5