HL_9H4N_007

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

9H4N|1|A2|G|232, 9H4N|1|A2|U|233, 9H4N|1|A2|G|234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|G|230
9H4N|1|A2|U|231
9H4N|1|A2|G|232
9H4N|1|A2|U|233
9H4N|1|A2|G|234
9H4N|1|A2|A|235
9H4N|1|A2|G|236
9H4N|1|A2|G|237
9H4N|1|A2|C|238

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain F2

Large ribosomal subunit protein uL4

Chain S2

Large ribosomal subunit protein uL24