HL_9H4N_014

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

GGGCGGACUGUCCCCAGUGCGCCC

Length

24 nucleotides

Bulged bases

9H4N|1|A2|G|1010, 9H4N|1|A2|U|1011, 9H4N|1|A2|C|1013, 9H4N|1|A2|C|1014

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|G|1001
9H4N|1|A2|G|1002
9H4N|1|A2|G|1003
9H4N|1|A2|C|1004
9H4N|1|A2|G|1005
9H4N|1|A2|G|1006
9H4N|1|A2|A|1007
9H4N|1|A2|C|1008
9H4N|1|A2|U|1009
9H4N|1|A2|G|1010
9H4N|1|A2|U|1011
9H4N|1|A2|C|1012
9H4N|1|A2|C|1013
9H4N|1|A2|C|1014
9H4N|1|A2|C|1015
9H4N|1|A2|A|1016
9H4N|1|A2|G|1017
9H4N|1|A2|U|1018
9H4N|1|A2|G|1019
9H4N|1|A2|C|1020
9H4N|1|A2|G|1021
9H4N|1|A2|C|1022
9H4N|1|A2|C|1023
9H4N|1|A2|C|1024

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain D1

Large ribosomal subunit protein uL16-like

Chain G2

Large ribosomal subunit protein uL18