HL_9H4N_017

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

UCGUCCGAAA

Length

10 nucleotides

Bulged bases

9H4N|1|A2|C|1179, 9H4N|1|A2|G|1180, 9H4N|1|A2|U|1181, 9H4N|1|A2|A|1185

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|U|1178
9H4N|1|A2|C|1179
9H4N|1|A2|G|1180
9H4N|1|A2|U|1181
9H4N|1|A2|C|1182
9H4N|1|A2|C|1183
9H4N|1|A2|G|1184
9H4N|1|A2|A|1185
9H4N|1|A2|A|1186
9H4N|1|A2|A|1187

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain F1

Large ribosomal subunit protein eL13

Chain F2

Large ribosomal subunit protein uL4

Chain H1

60S ribosomal protein L15

Chain S2

Large ribosomal subunit protein uL24